Annotation Data

The following Ensembl and GENCODE versions corresponding to the indicated reference genomes will be made available on the cluster.

Database	Version	Reference Genome
Ensembl	65	NCBIM37 (Ensembl release corresponding to GENCODE M1)
Ensembl	67	NCBIM37 (Ensembl release for sanger mouse genome assembly)
Ensembl	68	GRCm38 (Ensembl release for sanger mouse genome assembly)
Ensembl	74	GRCh37 (Ensembl release for GENCODE 19)
Ensembl	75	GRCh37 (Latest release for GRCh37)
Ensembl	79	GRCh38 (Ensembl release for GENCODE 22)
Ensembl	80	GRCh38 (Ensembl release corresponding to GENCODE 22)
Ensembl	80	GRCm38 (Ensembl release corresponding to GENCODE M1)
GENCODE	M1	NCBIM37 (No gff3 file)
GENCODE	M5	GRCm38
GENCODE	19	current for GRCh37
GENCODE	22	current for GRCh38

The annotation files associated with the indicated genomes can be accessed in the following directories:

static_data/annotation
├── ENSEMBL
│   ├── 65
│   │   └── NCBIM37
│   ├── 67
│   │   └── NCBIM37
│   ├── 68
│   │   └── GRCm38
│   ├── 74
│   │   └── GRCh37
│   ├── 75
│   │   └── GRCh37
│   ├── 79
│   │   └── GRCh38
│   └── 80
│       ├── GRCh38
│       └── GRCm38
└── GENCODE
    ├── 19
    │   └── GRCh37
    ├── 22
    │   └── GRCh38
    ├── M1
    │   └── NCBIM37
    └── M5
        └── GRCm38