The BIH HPC uses CentOS Linux. A basic understanding of Linux is required. Even better, you should already have intermediate to advanced Linux/Unix skills.
BIH HPC IT cannot provide you with basic Unix training. Please ask your home organization (e.g., Charite or MDC) to provide you with basic Linux training.
That said, here are some resources that we find useful:
There is a large number of Linux tutorials online including:
- Ryans Linux Tutorial
- Digital Ocean Tutorials
- Using Jupyter Notebooks to manage SLURM jobs
Global Organisation for Bioinformatics Learning, Education, and Training¶
GOBLET has a number of Bioinformatics-focused tutorials. This includes